Primer Locations

Primer# Box# Gene
1 – box 1 “Erα estrogen receptor (ESR1)”
2 – box 1 PR
3 – box 1 Her2 / Erbb2
4 – box 1 CD44
5 – box 1 CD24
6 – box 1 PROCR (CCD41)
7 – box 1 Thy1
8 – box 1 Vimentin
9 – box 1 CD49f/α6 Integrin (ITGA6)
10 – box 1 Sca-1 (cd59?)
11 – box 1 ALDH1A1
12 – box 1 TERT
13 – box 1 Muc1
14* – box 1 αSMA (ACTA1)
15 – box 1 CK5 (KRT5)
16 – box 1 CK14 (KRT14)
17 – box 1 CK19
18 – box 1 βCatenin (CTNNB1)
19 – box 1 E-cadherin (CDH1)
20 – box 1 Wnt2
21 – box 1 Wnt1
22 – box 1 Wnt10b
23 – box 1 Wnt4
24 – box 1 Wnt3a
25 – box 1 Wif1
26 – box 1 Dkk1
27 – box 1 Wisp3
28 – box 2 SFRP1
29 – box 2 “LEF1
(TCF1a, TCF10)”
30 – box 2 BMP4
31 – box 2 CyclinD1 (CCND1)
32 – box 2 cMyc
33 – box 2 Claudin1 (CLDN1)
34 – box 2 TCF7L2 (TCF4)
35 – box 2 TLE1 (groucho homolog)
36 – box 2 MSX1
37 – box 2 MSX2
38 – box 2 CBP/p300 (CITED4)
39 – box 2 Wisp1
40 – box 2 Sox9
41 – box 2 Twist
42 – box 2 Bmi1
43 – box 2 Cdx1
44 – box 2 Cdx2
45 – box 2 Notch4
46 – box 2 Numb
47 – box 2 Musashi (MSI1)
48 – box 2 DLL1
49 – box 2 DLL3
50 – box 2 DLL4
51 – box 2 Jagged1 (JAG1)
52 – box 2 Jagged2 (JAG2)
53 – box 2 Shh
54 – box 2 Ihh
55 – box 3 Dhh
56 – box 3 Patched 1 (PTCH1)
57 – box 3 Smo
58 – box 3 Gli1
59 – box 3 Gli2
60 – box 3 Nodal
61 – box 3 Cripto (TDGF1)
62 – box 3 Smad4
63 – box 3 ActivinA,A-B (InhBa)
64 – box 3 Activin B (Inhbb)
65 – box 3 BMP2
66 – box 3 BMPR1A
67 – box 3 Gremlin (GREM1)
68 – box 3 Noggin (NOG)
69 – box 3 Smad7
70 – box 3 CXCR4
71 – box 3 EGF
72 – box 3 PTEN
73 – box 3 Oct4 (POU5F1)
74 – box 3 Sox2
75 – box 3 Nanog
76 – box 3 Fbx-15 (FBXO15)
77 – box 3 Id1
78 – box 3 Id2
79 – box 3 Id3
80 – box 3 Id4
81 – box 3 PTHRP
82 – box 4 LIF
83 – box 4 ABCG2
84 – box 4 “Cx43
(GJA1)”
85 – box 4 Snail (SNAI1)
86 – box 4 Ubiquitin C (control)
87 – box 4 TBP (control)
88 – box 4 G6PD (control)
89 – box 4 ZNF217
90 – box 4 CD10 (MME)
91 – box 4 ESA (TACSTD1)
92 – box 4 CK18
93 – box 4 Ki-67
94 – box 4 GAPDH
95 – box 4 CTCF
96 – box 4 N-Cadherin (CDH2)
97 – box 4 FGF2
98 – box 4 Fibronection (FN1 )
99 – box 4 ACTA2 (asma)
100 – box p63 [TP63]
101 – box 4 ITGA1; CD49a
102 – box 4 ITGA2; CD49b
103 – box 4 ITGA3; CD49c
104 – box 4 ITGA4; CD49d
105 – box 4 ITGA5; CD49e
106 – box 4 ITGA6; CD49f v.2
107 – box 4 ITGA7
108 – box 4 ITGA8
109 – box 5 ITGA9
110 – box 5 ITGA10
111 – box 5 ITGA11
112 – box 5 ITGAD; CD11d
113 – box 5 ITGAE; CD103
114 – box 5 ITGAL; CD11a
115 – box 5 ITGAM; CD11b
116 – box 5 ITGAV; CD51
117 – box 5 ITGAW
118 – box 5 ITGAX; CD11c
119 – box 5 ITGB1; CD29
120 – box 5 ITGB2; CD18
121 – box 5 ITGB3; CD61
122 – box 5 ITGB4; CD104
123 – box 5 ITGB4; CD104 v2
124 – box 5 ITGB5
125 – box 5 ITGB6
126 – box 5 ITGB7
127 – box 5 ITGB8
128 – box 5 LAMA1
129 – box 5 LAMA3
130 – box 5 LAMA5
131 – box 5 “LAMR1
(RPSA)”
132 – box 5 COL17A1
133 – box 5 OXTR
134 – box 5 AMIGO2
135 – box 5 “Dystonin
(DST)”
136 – box 6 FGFR2
137 – box 6 “Glypican1
(GPC1)”
138 – box 6 CD34
139 – box 6 MMP2
140 – box 6 “tenascin N
(TNN)”
141 – box 6 SFRP2
142 – box 6 “Lysyl Oxidase 1
(LOXL1)”
143 – box 6 TGFB3
144 – box 6 LRP1
145 – box 6 PTGES
146 – box 6 COL1A1
147 – box 6 “SDF
(CXCL12)”
148 – box 6 GATA3
149 – box 6 “Lactoferrin
(LTF)”
150 – box 6 CAV1
151 – box 6 Trim5
152 – box 6 GSK3B
153 – box 6 LAMA2
154 – box 6 LAMA4
155 – box 6 LAMB1
156 – box 6 LAMB2
157 – box 6 LAMB3
158 – box 6 LAMB4
159 – box 6 LAMC1
160 – box 6 LAMC2
161 – box 6 LAMC3
162 – box 6 “NTR
(CD271)”
163 – box 7 GCNT1
164 – box 7 EGFR
165 – box 7 “c-kit
(CD117, stem cell factor receptor)”
166 – box 7 Zo-1 (TJP1)
167 – box 7 Notch 1
168 – box 7 Notch 2
169 – box 7 Notch 3
170 – box 7 DLK1
171 – box 7 DLK2
172 – box 7 “CSN1
(alpha casein)”
173 – box 7 “CSN2
(beta casein)”
174 – box 7 “CSN10
(kappa casein)”
175 – box 7 “Lactoperoxidase
(LPO)”
176 – box 7 “LACTADHERIN
(MFGE8)”
177 – box 7 “TRANSCOBALAMIN I
(TCN1)
Haptocorrin”
178 – box 7 “LACTALBUMIN
(LALBA)”
179 – box 7 “B4GALT1;
Lactose Synthetase”
180 – box 7 MUC15
181 – box 7 “keratin 8
(KRT8)”
182 – box 7 “keratin 18
(KRT18)”
183 – box 7 “keratin 17
(KRT17)”
184 – box 7 PPL
185 – box 7 XPO6
186 – box 7 TGFalpha
187 – box 7 PDGFA
188 – box 7 FGF1
189 – box 7 “FGFR1
(CD331)”
190 – box 8 “HGF
(scatter factor)”
191 – box 8 MET
192 – box 8 GRB7
193 – box 8 GJB3 (gap junction)
194 – box 8 GJB2
195 – box 8 “CDH3
P-CADHERIN”
196 – box 8 RhoA
197 – box 8 ROCK1
198 – box 8 LIMK1
199 – box 8 Rac1
200 – box 8 cdc42
201 – box 8 “TCF7
(TCF1)”
202 – box 8 IL6
203 – box 8 s100a4
204 – box 8 “Stratafin (SFN)
14-3-3 sigma”
205 – box 8 “PDGFRbeta
(CD140b)”
206 – box 8 DDR2
207 – box 8 Tenascin C (TNC)
208 – box 8 Lyve1
209 – box 8 “NG-2
(CSPG4)”
210 – box 8 “CD166
(ALCAM)”
211 – box 8 CD9
212 – box 8 “CD146
(MCAM)”
213 – box 8 “Epcam
(CD326)”
214 – box 8 CD46
215 – box 8 EGFR
216 – box 8 “Prominin-1
CD133 /(PROM1)”
217 – box 9 Gata6
218 – box 9 VEGFA
219 – box 9 BRCA-1
220 – box 9 BRCA-2
221 – box 9 “EEIG1
(FAM102A)”
222 – box 9 “E2IG4
(TSKU)”
223 – box 9 B4GALT1
224 – box 9 SLC2A1
225 – box 9 PDZK1
226 – box 9 CTSD
227 – box 9 “Aromatase
(CYP19A1)”

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